mod_mhd_phys.t File Reference

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Modules
module	mod_mhd_phys
	Magneto-hydrodynamics module.

Functions/Subroutines
subroutine, public	mod_mhd_phys::mhd_phys_init ()
subroutine, public	mod_mhd_phys::mhd_ei_to_e (ixil, ixol, w, x)
	Transform internal energy to total energy.
subroutine, public	mod_mhd_phys::mhd_e_to_ei (ixil, ixol, w, x)
	Transform total energy to internal energy.
subroutine, public	mod_mhd_phys::mhd_get_v (w, x, ixil, ixol, v)
	Calculate v vector.
subroutine, public	mod_mhd_phys::multiplyambicoef (ixil, ixol, res, w, x)
	multiply res by the ambipolar coefficient The ambipolar coefficient is calculated as -mhd_eta_ambi/rho^2 The user may mask its value in the user file by implemneting usr_mask_ambipolar subroutine
subroutine, public	mod_mhd_phys::mhd_get_rho (w, x, ixil, ixol, rho)
subroutine, public	mod_mhd_phys::get_normalized_divb (w, ixil, ixol, divb)
	get dimensionless div B = |divB| * volume / area / |B|
subroutine, public	mod_mhd_phys::get_current (w, ixil, ixol, idirmin, current)
	Calculate idirmin and the idirmin:3 components of the common current array make sure that dxlevel(^D) is set correctly.
double precision function, dimension(ixo^s), public	mod_mhd_phys::mhd_mag_en_all (w, ixil, ixol)
	Compute 2 times total magnetic energy.
subroutine, public	mod_mhd_phys::mhd_clean_divb_multigrid (qdt, qt, active)
subroutine, public	mod_mhd_phys::mhd_face_to_center (ixol, s)
	calculate cell-center values from face-center values
subroutine, public	mod_mhd_phys::b_from_vector_potential (ixisl, ixil, ixol, ws, x)
	calculate magnetic field from vector potential

Variables
double precision, public	mod_mhd_phys::mhd_gamma = 5.d0/3.0d0
	The adiabatic index.
double precision, public	mod_mhd_phys::mhd_adiab = 1.0d0
	The adiabatic constant.
double precision, public	mod_mhd_phys::mhd_eta = 0.0d0
	The MHD resistivity.
double precision, public	mod_mhd_phys::mhd_eta_hyper = 0.0d0
	The MHD hyper-resistivity.
double precision, public	mod_mhd_phys::mhd_etah = 0.0d0
	Hall resistivity.
double precision, public	mod_mhd_phys::mhd_eta_ambi = 0.0d0
	The MHD ambipolar coefficient.
double precision, public, protected	mod_mhd_phys::mhd_trac_mask = 0.d0
	Height of the mask used in the TRAC method.
double precision, public	mod_mhd_phys::mhd_glm_alpha = 0.5d0
	GLM-MHD parameter: ratio of the diffusive and advective time scales for div b taking values within [0, 1].
double precision, public, protected	mod_mhd_phys::mhd_reduced_c = 0.02d0*const_c
	Reduced speed of light for semirelativistic MHD: 2% of light speed.
double precision, public	mod_mhd_phys::hypertc_kappa
	The thermal conductivity kappa in hyperbolic thermal conduction.
double precision, public, protected	mod_mhd_phys::he_abundance =0.1d0
	Helium abundance over Hydrogen.
double precision, public, protected	mod_mhd_phys::h_ion_fr =1d0
	Ionization fraction of H H_ion_fr = H+/(H+ + H)
double precision, public, protected	mod_mhd_phys::he_ion_fr =1d0
	Ionization fraction of He He_ion_fr = (He2+ + He+)/(He2+ + He+ + He)
double precision, public, protected	mod_mhd_phys::he_ion_fr2 =1d0
	Ratio of number He2+ / number He+ + He2+ He_ion_fr2 = He2+/(He2+ + He+)
double precision, public, protected	mod_mhd_phys::rr =1d0
integer, public	mod_mhd_phys::equi_rho0_ = -1
	equi vars indices in the stateequi_vars array
integer, public	mod_mhd_phys::equi_pe0_ = -1
integer, public, protected	mod_mhd_phys::mhd_n_tracer = 0
	Number of tracer species.
integer, public, protected	mod_mhd_phys::rho_
	Index of the density (in the w array)
integer, dimension(:), allocatable, public, protected	mod_mhd_phys::mom
	Indices of the momentum density.
integer, public, protected	mod_mhd_phys::c
	Indices of the momentum density for the form of better vectorization.
integer, public, protected	mod_mhd_phys::m
integer, public, protected	mod_mhd_phys::c_
integer, public, protected	mod_mhd_phys::e_
	Index of the energy density (-1 if not present)
integer, public, protected	mod_mhd_phys::b
integer, public, protected	mod_mhd_phys::p_
	Index of the gas pressure (-1 if not present) should equal e_.
integer, public, protected	mod_mhd_phys::q_
	Index of the heat flux q.
integer, public, protected	mod_mhd_phys::psi_
	Indices of the GLM psi.
integer, public, protected	mod_mhd_phys::te_
	Indices of temperature.
integer, public, protected	mod_mhd_phys::tcoff_
	Index of the cutoff temperature for the TRAC method.
integer, public, protected	mod_mhd_phys::tweight_
integer, dimension(:), allocatable, public, protected	mod_mhd_phys::tracer
	Indices of the tracers.
integer, dimension(2 *^nd), public, protected	mod_mhd_phys::boundary_divbfix_skip =0
	To skip * layer of ghost cells during divB=0 fix for boundary.
logical, public, protected	mod_mhd_phys::mhd_energy = .true.
	Whether an energy equation is used.
logical, public, protected	mod_mhd_phys::mhd_thermal_conduction = .false.
	Whether thermal conduction is used.
logical, public, protected	mod_mhd_phys::mhd_radiative_cooling = .false.
	Whether radiative cooling is added.
logical, public, protected	mod_mhd_phys::mhd_hyperbolic_thermal_conduction = .false.
	Whether thermal conduction is used.
logical, public, protected	mod_mhd_phys::mhd_viscosity = .false.
	Whether viscosity is added.
logical, public, protected	mod_mhd_phys::mhd_gravity = .false.
	Whether gravity is added.
logical, public, protected	mod_mhd_phys::mhd_rotating_frame = .false.
	Whether rotating frame is activated.
logical, public, protected	mod_mhd_phys::mhd_hall = .false.
	Whether Hall-MHD is used.
logical, public, protected	mod_mhd_phys::mhd_ambipolar = .false.
	Whether Ambipolar term is used.
logical, public, protected	mod_mhd_phys::mhd_ambipolar_sts = .false.
	Whether Ambipolar term is implemented using supertimestepping.
logical, public, protected	mod_mhd_phys::mhd_ambipolar_exp = .false.
	Whether Ambipolar term is implemented explicitly.
logical, public, protected	mod_mhd_phys::mhd_particles = .false.
	Whether particles module is added.
logical, public, protected	mod_mhd_phys::mhd_magnetofriction = .false.
	Whether magnetofriction is added.
logical, public, protected	mod_mhd_phys::mhd_glm = .false.
	Whether GLM-MHD is used to control div B.
logical, public, protected	mod_mhd_phys::mhd_glm_extended = .true.
	Whether extended GLM-MHD is used with additional sources.
logical, public, protected	mod_mhd_phys::mhd_trac = .false.
	Whether TRAC method is used.
integer, public, protected	mod_mhd_phys::mhd_trac_type =1
	Which TRAC method is used.
integer, public, protected	mod_mhd_phys::mhd_trac_finegrid =4
	Distance between two adjacent traced magnetic field lines (in finest cell size)
logical, public, protected	mod_mhd_phys::mhd_internal_e = .false.
	Whether internal energy is solved instead of total energy.
logical, public, protected	mod_mhd_phys::mhd_hydrodynamic_e = .false.
	Whether hydrodynamic energy is solved instead of total energy.
logical, public, protected	mod_mhd_phys::source_split_divb = .false.
	Whether divB cleaning sources are added splitting from fluid solver.
logical, public, protected	mod_mhd_phys::mhd_semirelativistic = .false.
	Whether semirelativistic MHD equations (Gombosi 2002 JCP) are solved.
logical, public, protected	mod_mhd_phys::mhd_partial_ionization = .false.
	Whether plasma is partially ionized.
logical, public, protected	mod_mhd_phys::mhd_cak_force = .false.
	Whether CAK radiation line force is activated.
logical, public, protected	mod_mhd_phys::mhd_4th_order = .false.
	MHD fourth order.
logical, public	mod_mhd_phys::has_equi_rho0 = .false.
	whether split off equilibrium density
logical, public	mod_mhd_phys::has_equi_pe0 = .false.
	whether split off equilibrium thermal pressure
logical, public	mod_mhd_phys::mhd_equi_thermal = .false.
logical, public, protected	mod_mhd_phys::mhd_dump_full_vars = .false.
	whether dump full variables (when splitting is used) in a separate dat file
logical, public, protected	mod_mhd_phys::mhd_divb_4thorder = .false.
	Whether divB is computed with a fourth order approximation.
logical, public	mod_mhd_phys::divbwave = .true.
	Add divB wave in Roe solver.
logical, public	mod_mhd_phys::clean_initial_divb = .false.
	clean initial divB
logical, public, protected	mod_mhd_phys::eq_state_units = .true.
logical, dimension(2 *^nd), public, protected	mod_mhd_phys::boundary_divbfix =.true.
	To control divB=0 fix for boundary.
logical, public, protected	mod_mhd_phys::b0field_forcefree =.true.
	B0 field is force-free.
logical, public	mod_mhd_phys::partial_energy = .false.
	Whether an internal or hydrodynamic energy equation is used.
character(len=std_len), public, protected	mod_mhd_phys::typedivbfix = 'linde'
	Method type to clean divergence of B.
character(len=std_len), public, protected	mod_mhd_phys::type_ct = 'uct_contact'
	Method type of constrained transport.
type(tc_fluid), allocatable, public	mod_mhd_phys::tc_fl
	type of fluid for thermal conduction
type(te_fluid), allocatable, public	mod_mhd_phys::te_fl_mhd
	type of fluid for thermal emission synthesis
type(rc_fluid), allocatable, public	mod_mhd_phys::rc_fl
	type of fluid for radiative cooling
procedure(mask_subroutine), pointer, public	mod_mhd_phys::usr_mask_ambipolar => null()
procedure(sub_convert), pointer, public	mod_mhd_phys::mhd_to_primitive => null()
procedure(sub_convert), pointer, public	mod_mhd_phys::mhd_to_conserved => null()
procedure(sub_get_pthermal), pointer, public	mod_mhd_phys::mhd_get_pthermal => null()
procedure(sub_get_pthermal), pointer, public	mod_mhd_phys::mhd_get_temperature => null()